The Peptide CommonsEst. May 2024
Independent. We sell nothing and are affiliated with no manufacturer or pharmacy. Every moderation action is logged in public
Analytics · Mass spectrometry · continued

High-resolution MS on aggregates and what it can see posts 121–124

This is a continuation of a long topic, addressed by post number rather than by page. Start at post 1.

I
IRenaudinTL2Member15 Nov 2025#121
TL4_Halvorsen, post #17: Resolution and mass accuracy are different specifications. An instrument can resolve two species and still assign their masses imprecisely, and the reverse is also possible. Go to post

The documentation on high-resolution is better than this thread and I say that as someone who has posted in the thread.

4 likes in reply to #17 8mo
SC
s.chowdhuryTL3Regular16 Nov 2025#122

Reframing high-resolution slightly, because I think the disagreement is about the question rather than the answer. If the question is "does it happen", yes. If it is "how often", nobody here knows.

0 likes 8mo
MM
methods_marginTL3Regular17 Nov 2025#123

On post #119 — agreed on the reasoning, with one qualification.

Resolution: "high resolution" commonly means <5 ppm across the mass range. Unit-resolution instruments achieve ±1 Da at best and cannot distinguish two species differing by less than 1 Da in total mass.

27 likes 8mo
EB
e.bakkenTL218 Nov 2025#124
f.villalobos, post #45: Positional isomers and epimers are mass-identical. Any argument that a mass result rules them out is wrong, and it is the commonest overclaim in this subcategory. Go to post

Picking up post #123: that is the part I would want checked first.

Resolution and mass accuracy are different specifications. An instrument can resolve two species and still assign their masses imprecisely, and the reverse is also possible.

13 likes in reply to #45 8mo

Suggested topics

TopicParticipantsRepliesViewsActivity
Charge states for a 4 kDa peptide, worked through — the long version
Charge states for a 4 kDa peptide, worked through — the long version Writing it up because I had to work it out twice and would rather nobody else did. Working through the identity arithmetic and I would like…
HEGTMI 2 293 3mo
Coming back to: Deconvolution of a multiply charged envelope
On the subject in the title: Deconvolution of a multiply charged envelope Working notes rather than a conclusion. Working through the identity arithmetic and I would like it checked. tirzepatide has a…
VRCVEL 2 12k 22mo
What a 2 ppm match establishes, and what it does not
What a 2 ppm match establishes, and what it does not — that is the question, and I have not found it answered plainly anywhere I have looked. Working through the identity arithmetic and I would like it…
JVBPSOOAK+56 60 5.2k 9mo
Second pass at: Counter-ion content and its effect on measured mass
Second pass at: Counter-ion content and its effect on measured mass Writing it up because I had to work it out twice and would rather nobody else did. Something about Counter-ion content does not reconcile…
SORSLAFFOV 4 16k 4mo
Reading an MS report that only gives you a single number — the long version
Reading an MS report that only gives you a single number — the long version — setting out what I have, and where I think it stops being reliable. I would like to understand what this number means before I…
TTRAK 2 47k 18mo

Related topics — sharing the tags charge states, counter-ion content, high-resolution MS

TopicParticipantsRepliesViewsActivity
About the Mass spectrometry category
LC-MS and high-resolution MS, charge states, mass accuracy in ppm, and what identity confirmation does and does not establish. This post is a community wiki: any member at trust level 3 or above can edit it,…
DOOBLDBDRV+5 9 19k 6h
Second pass at: Where impurities in solid-phase peptide synthesis come from
Second pass at: Where impurities in solid-phase peptide synthesis come from Writing it up because I had to work it out twice and would rather nobody else did. Impurities in solid-phase peptide synthesis, from…
GHDBEVLSMP+4 8 7.2k 1mo
Particulates in a reconstituted solution: identifying the likely source
Posting this under the heading it deserves: Particulates in a reconstituted solution: identifying the likely source Everything below is what sits behind that. Something about particulates does not reconcile…
SCNECCYMRM+15 19 13k 9mo
Reading an MS report that only gives you a single number — the long version
Reading an MS report that only gives you a single number — the long version — setting out what I have, and where I think it stops being reliable. I would like to understand what this number means before I…
TTRAK 2 47k 18mo
Deletion sequences: expected mass shifts by residue — the long version
On the subject in the title: Deletion sequences: expected mass shifts by residue — the long version Working notes rather than a conclusion. Deletion sequences keeps being re-asked here and I think that is…
DBNASCPWEH+21 25 6.9k 10h