The Peptide CommonsEst. May 2024
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Topic summary

High-resolution MS on aggregates and what it can see — one year on

This is a generated summary. It shows the 8 most-liked posts from a topic of 59, in their original order, with the accepted answer included where one exists. It is a reading aid and it will miss nuance — the full topic is the record.
ND
n.duarteTL28 Aug 2024#2

Picking up the opening post: that is the part I would want checked first.

What mass accuracy establishes: the measured mass is consistent with a specific composition. What it does not establish: purity, sequence order, stereochemistry, or the absence of an isobaric species. Every one of those requires something else.

It is the sort of thing that seems obvious in retrospect and was not at the time.

32 likes 2y
BE
bench_entryTL3Regular Solution9 Aug 2024#3

Calibration matters: a high-resolution instrument out of calibration can report mass with ppm error large enough to be uninformative. Check when the instrument was last calibrated before trusting the reported accuracy.

11 likes 2y
SA
s.antonsenTL212 Aug 2024#13

Electrospray ionisation produces multiply charged ions. For a 4 kDa peptide you expect mostly 2+, 3+, and 4+ charge states. Reading an electrospray spectrum means recognizing the envelope, not looking for one peak.

Two people can read the same figure differently here and both be reasonable.

23 likes 2y
HB
h.bakkerTL213 Aug 2024#17

Resolution and mass accuracy are different specifications. An instrument can resolve two species and still assign their masses imprecisely, and the reverse is also possible.

Not a conclusion. A place to stand while looking for one.

30 likes 23mo
BA
b.aaltoTL214 Aug 2024#24

Thank you for the correction. I would rather find out here than later.

25 likes 23mo
RC
r.coelhoTL216 Aug 2024#32

Reading back through, this was answered upthread and I missed it. My fault.

27 likes 23mo
HR
h.ramosTL218 Aug 2024#43
customs_ledger, post #9: Post #5 and I disagree about the size of the effect, not about the direction. Where I would push back on the High-resolution consensus is the confidence, not the direction. The direction looks right. The confidence is borrowed. Go to post

Two people in this thread mean different things by High-resolution and are disagreeing about the definition while believing they are disagreeing about the facts. Worth pausing to define it.

32 likes in reply to #9 23mo
P
PSundbergTL2Member20 Aug 2024#52

An observation about High-resolution that I cannot explain and am posting anyway, on the principle that unexplained observations are more useful public than private.

24 likes 23mo

Read the full topic (59 posts)

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