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Evidence · Trials · continued

Primary endpoint hierarchies and why order matters — one year on posts 31–60

This is a continuation of a long topic, addressed by post number rather than by page. Start at post 1 · go to the accepted answer.

OA
o.abrahamsenTL3Regular30 Jun 2026#31
b.correia, post #14: Adding the measurement that post #11 says would settle it. Where I would push back on the Primary endpoint hierarchies consensus is the confidence, not the direction. The direction looks right. The confidence is borrowed. Go to post

Coming back to post #29, because the follow-up matters more than the original answer.

An observation about Primary endpoint hierarchies that I cannot explain and am posting anyway, on the principle that unexplained observations are more useful public than private.

4 likes in reply to #14 27d
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m.nwosuTL21 Jul 2026#32

Understood, and I withdraw the assumption I opened with.

0 likes 27d
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e.kjeldsenTL2Member2 Jul 2026#33

A trial that answers a slightly different question from the one you have is the normal situation rather than a failure of the trial. The skill is describing the gap precisely.

0 likes 26d
PL
p.lindqvistTL23 Jul 2026#34
r.marsden, post #27: Registration before enrolment, with the primary endpoint declared, is what makes outcome switching detectable. Checking the registry against the paper takes five minutes and is worth doing. Go to post

Registration before enrolment, with the primary endpoint declared, is what makes outcome switching detectable. Checking the registry against the paper takes five minutes and is worth doing.

The step people skip is the one I have spelled out.

19 likes in reply to #27 25d
CI
c.inglethorpeTL3Regular4 Jul 2026#35
j.vandermolen, post #13: Risk of bias: structured appraisal of internal validity. Key things to assess: randomisation method (was it truly random or could someone predict the next assignment), concealment (could randomisation be subverted), blinding (who was blinded and why or why not), completeness of outcome reporting. I would rather post the uncertainty than… Go to post

Primary endpoint hierarchies has a well-known answer and a correct answer, and the interesting work is establishing that they are the same. Nobody has done that here yet.

8 likes in reply to #13 24d
HB
h.bhattacharyaTL25 Jul 2026#36

Confirming post #33 from a second method, which matters more than confirming it from a second person.

The documentation on Primary endpoint hierarchies is better than this thread and I say that as someone who has posted in the thread.

2 likes 23d
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CSagredoTL3Regular6 Jul 2026 · edited#37

Risk of bias: structured appraisal of internal validity. Key things to assess: randomisation method (was it truly random or could someone predict the next assignment), concealment (could randomisation be subverted), blinding (who was blinded and why or why not), completeness of outcome reporting.

0 likes 22d
RN
r.novakTL27 Jul 2026#38
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BGiordanoTL2Member8 Jul 2026#39

I had read the opposite somewhere and cannot now find where, which tells me something.

0 likes 20d
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a.mwangiTL29 Jul 2026#40

What I would check first on Primary endpoint hierarchies is whether the thing being measured moved or whether the way of measuring it moved. Those look identical in a graph.

0 likes 19d
HC
h.castellanosTL210 Jul 2026#41
b.correia, post #14: Adding the measurement that post #11 says would settle it. Where I would push back on the Primary endpoint hierarchies consensus is the confidence, not the direction. The direction looks right. The confidence is borrowed. Go to post

Post #40 answers the question as asked. The question underneath it is different.

A treatment-policy estimand asks what happens to people assigned to a strategy, including those who abandon it. A hypothetical estimand asks what would have happened had everyone continued. Both are legitimate and they give different numbers.

That is the version I would defend. It is not the version I started with.

7 likes in reply to #14 18d
K
KStephanopoulosTL3Regular10 Jul 2026#42
sterile_table, post #23: Acknowledging rather than arguing. The reasoning holds as far as I can follow it. Go to post

Agreed on Primary endpoint hierarchies, with one qualification that I think matters. The reasoning holds for the case as described. Change the starting assumption and it does not, and the starting assumption is the part nobody states.

18 likes in reply to #23 17d
KK
k.kuuselaTL211 Jul 2026#43

Dropout is information: high dropout rates can indicate tolerability problems or lower efficacy than the summary suggests. Where the analysis handled dropouts matters. An intention-to-treat analysis with many dropouts can give a smaller apparent effect than per-protocol analysis.

I have no interest in any supplier named above.

0 likes 17d
FE
footnote_entryTL3Regular12 Jul 2026#44

Clear enough that I do not think I have a follow-up, which is unusual.

1 like 16d
TB
t.batistaTL213 Jul 2026#45
i.guerrero, post #20: Building on post #19 rather than restating it. Absolute and relative effects answer different questions. Write down the event rate in each arm and the difference between them; everything quotable is derived from those two numbers. Go to post

Composite endpoints should be read component by component. A composite driven entirely by its softest component is a different finding from one where the components move together.

A qualification I should have led with rather than closed on.

4 likes in reply to #20 15d
BP
bench_peakTL3Regular14 Jul 2026#46
m.yildiz, post #30: Multiplicity and multiple comparisons: if a trial tests many hypotheses, the chance of a false positive on at least one by random chance increases. This is why pre-specification of the primary endpoint matters and why secondary endpoints are weaker evidence. Go to post

Subgroup analyses are hypothesis-generating unless pre-specified and adequately powered, and almost none are the second. The interaction test matters more than the subgroup point estimate.

Reporting the observation and leaving the explanation open deliberately.

13 likes in reply to #30 14d
TI
t.ibarraTL215 Jul 2026#47

Practical answer on Primary endpoint hierarchies, since the theoretical one is upthread: do the simplest check first, write down the result, and only then decide whether the complicated explanation is needed. It usually is not.

0 likes 13d
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IsaksenTL3Regular16 Jul 2026#48

Post #45 put the caveat in the right place and I want to underline it.

Genuine question rather than a rhetorical one: has anyone here actually observed Primary endpoint hierarchies, as opposed to read about it? The thread is long and I cannot tell.

0 likes 12d
PB
p.boatengTL217 Jul 2026#49

Risk of bias: structured appraisal of internal validity. Key things to assess: randomisation method (was it truly random or could someone predict the next assignment), concealment (could randomisation be subverted), blinding (who was blinded and why or why not), completeness of outcome reporting.

2 likes 11d
CD
cohort_driftTL3Regular17 Jul 2026#50
c.serrano, post #18: The arithmetic in post #15 is right; the assumption feeding it is the part to check. The practical version of Primary endpoint hierarchies is three sentences long. The rigorous version is three pages and reaches the same conclusion with the conditions attached. Go to post

Open-label design: unblinded trials admit expectation effects. For weight-loss trials where one arm loses substantial weight and the other does not, complete blinding is impossible anyway. The unblinded nature is a limitation worth noting.

8 likes in reply to #18 10d
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n.norgaardTL218 Jul 2026#51

Absolute numbers, not just relative: a 30% relative reduction tells you the ratio but not the practical magnitude. The event rate in each arm and the difference between them tells you how many people benefit.

If it helps: the failure mode here is usually boring rather than dramatic.

3 likes 10d
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f.fenwickTL3Regular19 Jul 2026 · edited#52

The arithmetic in post #51 is right; the assumption feeding it is the part to check.

A note on scope: what I am saying about Primary endpoint hierarchies applies to the case in the first post and I would not extend it further without checking.

0 likes 9d
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o.vogelTL220 Jul 2026#53

Post #51 put the caveat in the right place and I want to underline it.

Surrogate endpoints: an endpoint that is not the outcome that matters but is measured as a stand-in. HbA1c is a surrogate for long-term glucose control and the short-term complications it prevents. Weight loss is a surrogate for metabolic health and long-term outcomes. Surrogates are useful but not identical to the endpoint that matters.

That is what I would do. It may not be what is correct.

25 likes 8d
MD
m.duarteTL221 Jul 2026#54
a.mwangi, post #40: What I would check first on Primary endpoint hierarchies is whether the thing being measured moved or whether the way of measuring it moved. Those look identical in a graph. Go to post

I think the Primary endpoint hierarchies question is answerable and has not been answered, which is a more optimistic position than most of this thread.

11 likes in reply to #40 7d
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g.verhoevenTL222 Jul 2026#55
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ZieglerTL3Regular22 Jul 2026#56

On Primary endpoint hierarchies, the part that usually goes wrong is that the question is asked as though it has one answer. It has a range, and the width of the range is the interesting bit.

If you can post the two or three numbers you are working from, several people here will check the arithmetic rather than argue about the conclusion.

1 like 5d
AP
ar.petrovTL223 Jul 2026#57

Where I part company with post #56, and it is a narrow parting.

A treatment-policy estimand asks what happens to people assigned to a strategy, including those who abandon it. A hypothetical estimand asks what would have happened had everyone continued. Both are legitimate and they give different numbers.

That has been true for the cases I have seen and I have not seen many.

33 likes 5d
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r.scholtenTL2Member24 Jul 2026#58
CSagredo, post #37: Risk of bias: structured appraisal of internal validity. Key things to assess: randomisation method (was it truly random or could someone predict the next assignment), concealment (could randomisation be subverted), blinding (who was blinded and why or why not), completeness of outcome reporting. Go to post

Post #56 is the version of this I will quote in future. One addition.

Number needed to treat is only interpretable with the duration attached. The same NNT over one year and over five years describes very different clinical situations.

It is the sort of thing that seems obvious in retrospect and was not at the time.

17 likes in reply to #37 4d
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bench_notesTL4 Moderator25 Jul 2026 · edited#59

Open-label design: unblinded trials admit expectation effects. For weight-loss trials where one arm loses substantial weight and the other does not, complete blinding is impossible anyway. The unblinded nature is a limitation worth noting.

Anyone who has looked at this more carefully, please correct the record.

0 likes 3d
KP
k.perrinTL226 Jul 2026#60

Dropout is information: high dropout rates can indicate tolerability problems or lower efficacy than the summary suggests. Where the analysis handled dropouts matters. An intention-to-treat analysis with many dropouts can give a smaller apparent effect than per-protocol analysis.

0 likes 2d